Variant report

Variant	rs1362982
Chromosome Location	chr12:106345003-106345004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11112811	1.00[ASN][1000 genomes]
rs12229493	1.00[ASN][1000 genomes]
rs12297585	1.00[ASN][1000 genomes]
rs12314342	1.00[TSI][hapmap]
rs6539236	1.00[TSI][hapmap]
rs7135356	1.00[TSI][hapmap]
rs744346	1.00[TSI][hapmap]
rs744347	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106336600-106347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106339000-106347600	Weak transcription	NHEK	skin
3	chr12:106339200-106348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:106339200-106348600	Weak transcription	HMEC	breast
5	chr12:106340600-106355800	Weak transcription	Esophagus	oesophagus
6	chr12:106342800-106345600	Weak transcription	Right Atrium	heart
7	chr12:106342800-106348800	Weak transcription	HSMMtube	muscle
8	chr12:106343000-106348800	Weak transcription	Aorta	Aorta
9	chr12:106343400-106347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:106343400-106348600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:106344600-106345600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr12:106344800-106346000	Enhancers	Left Ventricle	heart
13	chr12:106344800-106346200	Enhancers	Fetal Heart	heart
14	chr12:106345000-106345400	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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