Variant report

Variant	rs12297585
Chromosome Location	chr12:106355070-106355071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106348322..106349923-chr12:106353248..106355094,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11112809	0.93[EUR][1000 genomes]
rs11112811	1.00[ASN][1000 genomes]
rs11112817	0.93[EUR][1000 genomes]
rs11112820	0.93[EUR][1000 genomes]
rs12229493	1.00[ASN][1000 genomes]
rs1362982	1.00[ASN][1000 genomes]
rs1421448	1.00[EUR][1000 genomes]
rs1421449	1.00[EUR][1000 genomes]
rs59613985	1.00[EUR][1000 genomes]
rs7139318	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv519500	chr12:106350456-106356170	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106340600-106355800	Weak transcription	Esophagus	oesophagus
2	chr12:106353600-106356800	Enhancers	HSMMtube	muscle
3	chr12:106353800-106355200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr12:106353800-106355400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:106353800-106356200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:106353800-106356600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:106353800-106356600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:106353800-106356600	Enhancers	HMEC	breast
9	chr12:106353800-106356600	Enhancers	NHEK	skin
10	chr12:106353800-106356800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:106354000-106356200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:106354000-106356200	Enhancers	Fetal Heart	heart
13	chr12:106354200-106355200	Enhancers	Right Atrium	heart
14	chr12:106354200-106356600	Enhancers	HSMM	muscle
15	chr12:106354400-106355800	Weak transcription	Aorta	Aorta
16	chr12:106354400-106358800	Weak transcription	Left Ventricle	heart
17	chr12:106354600-106355200	Enhancers	A549	lung
18	chr12:106354600-106355400	Enhancers	Right Ventricle	heart
19	chr12:106354600-106355600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:106354800-106355600	Weak transcription	Pancreas	Pancrea
21	chr12:106354800-106355800	Weak transcription	NH-A	brain
22	chr12:106354800-106356600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:106354800-106360000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr12:106354800-106360600	Weak transcription	Psoas Muscle	Psoas

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