Variant report

Variant	rs11112809
Chromosome Location	chr12:106340833-106340834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10507206	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10507208	0.98[ASN][1000 genomes]
rs11112817	1.00[EUR][1000 genomes]
rs11112820	1.00[EUR][1000 genomes]
rs11832233	0.98[ASN][1000 genomes]
rs11834252	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12297585	0.93[EUR][1000 genomes]
rs1344565	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1421448	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1421449	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17037888	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17037895	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17037905	0.98[ASN][1000 genomes]
rs17037907	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17037908	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17037910	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17037913	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2080754	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2160990	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58383907	0.98[ASN][1000 genomes]
rs59302317	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs59403929	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs59613985	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59695411	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61577537	0.88[ASN][1000 genomes]
rs7139318	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7297644	0.98[ASN][1000 genomes]
rs7299253	0.98[ASN][1000 genomes]
rs73391298	0.98[ASN][1000 genomes]
rs73393231	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73393236	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73393251	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73393253	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73393255	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73393256	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7956779	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106336600-106347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106337800-106342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106339000-106342000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:106339000-106347600	Weak transcription	NHEK	skin
5	chr12:106339200-106343000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:106339200-106348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:106339200-106348600	Weak transcription	HMEC	breast
8	chr12:106339600-106341200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:106339600-106341400	Enhancers	Fetal Heart	heart
10	chr12:106340400-106341000	Enhancers	Fetal Lung	lung
11	chr12:106340400-106341000	Enhancers	NH-A	brain
12	chr12:106340400-106341200	Genic enhancers	HSMMtube	muscle
13	chr12:106340400-106341200	Enhancers	K562	blood
14	chr12:106340400-106342800	Enhancers	Right Atrium	heart
15	chr12:106340600-106341600	Weak transcription	Psoas Muscle	Psoas
16	chr12:106340600-106355800	Weak transcription	Esophagus	oesophagus
17	chr12:106340800-106341000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:106340800-106341000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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