Variant report

Variant	rs61577537
Chromosome Location	chr12:106362568-106362569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10507206	0.89[ASN][1000 genomes]
rs10507208	0.89[ASN][1000 genomes]
rs11112809	0.88[ASN][1000 genomes]
rs11832233	0.89[ASN][1000 genomes]
rs11834252	0.91[ASN][1000 genomes]
rs1344565	0.89[ASN][1000 genomes]
rs1421448	0.90[ASN][1000 genomes]
rs1421449	0.90[ASN][1000 genomes]
rs17037888	0.88[ASN][1000 genomes]
rs17037895	0.89[ASN][1000 genomes]
rs17037905	0.89[ASN][1000 genomes]
rs17037907	0.89[ASN][1000 genomes]
rs17037908	0.89[ASN][1000 genomes]
rs17037910	0.89[ASN][1000 genomes]
rs17037913	0.89[ASN][1000 genomes]
rs2080754	0.89[ASN][1000 genomes]
rs2160990	0.89[ASN][1000 genomes]
rs58383907	0.90[ASN][1000 genomes]
rs59302317	0.89[ASN][1000 genomes]
rs59403929	0.88[ASN][1000 genomes]
rs59613985	0.86[ASN][1000 genomes]
rs59695411	0.89[ASN][1000 genomes]
rs7139318	0.90[ASN][1000 genomes]
rs7297644	0.89[ASN][1000 genomes]
rs7299253	0.89[ASN][1000 genomes]
rs73391298	0.89[ASN][1000 genomes]
rs73393231	0.89[ASN][1000 genomes]
rs73393236	0.89[ASN][1000 genomes]
rs73393251	0.91[ASN][1000 genomes]
rs73393253	0.91[ASN][1000 genomes]
rs73393255	0.91[ASN][1000 genomes]
rs73393256	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106356000-106376000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106356600-106364000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:106356800-106363200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:106359200-106363800	Enhancers	Fetal Heart	heart
5	chr12:106361000-106367000	Weak transcription	Right Atrium	heart
6	chr12:106362200-106364400	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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