Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10866614	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10866615	0.81[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11134476	0.81[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs11134477	0.81[CEU][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs11134478	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11134479	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11738159	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13172139	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13181047	0.80[AMR][1000 genomes]
rs1421978	0.88[CEU][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1421981	0.82[EUR][1000 genomes]
rs1421985	0.85[CEU][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1421987	0.83[AMR][1000 genomes]
rs1421988	0.81[CEU][hapmap]
rs17434346	0.83[ASW][hapmap];0.92[CEU][hapmap];0.86[MEX][hapmap]
rs17525725	0.91[ASW][hapmap];0.85[CEU][hapmap]
rs2193981	0.81[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap]
rs28547994	0.83[AMR][1000 genomes]
rs36055428	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4868810	0.80[ASN][1000 genomes]
rs4869078	0.92[CEU][hapmap]
rs4869079	0.96[CEU][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7700480	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167266600-167326200	Weak transcription	HMEC	breast
2	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167305800-167323600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167306400-167326600	Weak transcription	HSMM	muscle
5	chr5:167310600-167323000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:167312600-167325400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:167316800-167325000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:167317000-167324800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:167317000-167325000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:167317000-167325400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167317200-167322800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:167318400-167321600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167319000-167320400	Enhancers	Fetal Heart	heart
14	chr5:167319000-167323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:167319600-167320400	Enhancers	Ovary	ovary
16	chr5:167319600-167326600	Weak transcription	NHEK	skin

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