Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10866614	0.81[CEU][hapmap]
rs10866615	0.81[CEU][hapmap]
rs11134476	0.81[CEU][hapmap]
rs11134477	0.81[CEU][hapmap]
rs11134478	0.81[CEU][hapmap]
rs11134479	0.84[CEU][hapmap]
rs11738159	0.85[CEU][hapmap]
rs13181047	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1363203	0.83[ASW][hapmap];0.92[CEU][hapmap];0.86[MEX][hapmap]
rs1421978	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1421985	0.85[CEU][hapmap];0.82[MEX][hapmap]
rs1421988	0.81[CEU][hapmap]
rs1477284	0.81[GIH][hapmap]
rs17512980	0.81[CEU][hapmap]
rs17525725	0.81[ASW][hapmap];0.92[CEU][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap]
rs2193981	0.81[CEU][hapmap]
rs4868810	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4869078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869079	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7700480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167252600-167276000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:167262800-167270600	Weak transcription	HSMM	muscle
4	chr5:167263200-167271200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167266600-167326200	Weak transcription	HMEC	breast
6	chr5:167266800-167272800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:167267200-167271200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167267800-167272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:167269000-167278000	Strong transcription	NHEK	skin
10	chr5:167270000-167270400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:167270000-167271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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