Variant report

Variant	rs17512980
Chromosome Location	chr5:167291698-167291699
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10866614	0.89[CEU][hapmap]
rs10866615	0.88[CEU][hapmap]
rs11134476	0.88[CEU][hapmap]
rs11134477	0.88[CEU][hapmap]
rs11134478	0.88[CEU][hapmap]
rs11134479	0.89[CEU][hapmap];0.81[CHB][hapmap]
rs11738159	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs1421981	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs1421985	0.84[CEU][hapmap]
rs1421988	0.89[CEU][hapmap];0.81[CHB][hapmap]
rs1477284	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17434346	0.81[CEU][hapmap]
rs2193981	0.88[CEU][hapmap]
rs4869078	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167266600-167326200	Weak transcription	HMEC	breast
3	chr5:167281600-167296600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167281800-167301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167288200-167291800	Strong transcription	NHEK	skin
7	chr5:167288200-167295000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167288200-167296600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167289000-167294200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:167289600-167297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:167290200-167301600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167291000-167291800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167291000-167294000	Weak transcription	Brain Germinal Matrix	brain
14	chr5:167291200-167292400	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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