Variant report

Variant	rs1363560
Chromosome Location	chr5:167645888-167645889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1874460	0.81[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs3797719	0.86[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4976539	0.86[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7708354	0.82[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9918152	0.84[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
2	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
3	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
4	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:167624600-167646600	Weak transcription	Liver	Liver
6	chr5:167634800-167646400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167635200-167646000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167636400-167646600	Strong transcription	NHEK	skin
9	chr5:167637000-167646200	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:167637200-167646000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:167637200-167646200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167637200-167646400	Weak transcription	Brain Angular Gyrus	brain
13	chr5:167637200-167646400	Weak transcription	Brain Anterior Caudate	brain
14	chr5:167637200-167646400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:167637200-167646600	Weak transcription	Fetal Brain Male	brain
16	chr5:167637200-167646600	Weak transcription	NH-A	brain
17	chr5:167637800-167646600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:167639000-167646400	Weak transcription	Fetal Lung	lung
19	chr5:167639400-167646200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:167639400-167653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:167641200-167646600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:167642000-167646200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:167643000-167646400	Weak transcription	HSMM	muscle
24	chr5:167643200-167646600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:167643400-167646200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:167643400-167650200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:167643800-167646200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:167643800-167646400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:167643800-167646600	Weak transcription	Adipose Nuclei	Adipose
30	chr5:167644000-167646200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr5:167644000-167646200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr5:167644000-167646200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:167644000-167646200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr5:167644000-167646200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr5:167644000-167646400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr5:167644000-167646400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:167644000-167646400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:167644400-167646200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr5:167644600-167646200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:167644600-167646600	Weak transcription	Fetal Stomach	stomach
41	chr5:167644600-167646600	Weak transcription	Right Atrium	heart
42	chr5:167645200-167646000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:167645200-167646000	Strong transcription	Right Ventricle	heart
44	chr5:167645200-167646200	Strong transcription	HMEC	breast
45	chr5:167645400-167646200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:167645800-167646000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr5:167645800-167646000	Enhancers	Lung	lung
48	chr5:167645800-167647200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr5:167645800-167651200	Weak transcription	Left Ventricle	heart

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