Variant report

Variant	rs3797719
Chromosome Location	chr5:167626696-167626697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167625904..167627787-chr5:167630198..167633051,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12659719	0.86[CHD][hapmap];0.84[ASN][1000 genomes]
rs12659776	0.85[ASN][1000 genomes]
rs1363560	0.86[CEU][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1874460	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34187866	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34571245	0.84[EUR][1000 genomes]
rs34608084	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4976539	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58151545	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61098277	0.85[EUR][1000 genomes]
rs7700672	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs7708354	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9918152	0.81[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv600256	chr5:167622914-167643545	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167606600-167626800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167608600-167631800	Weak transcription	NH-A	brain
3	chr5:167615800-167633800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
5	chr5:167617000-167628200	Strong transcription	NHEK	skin
6	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
7	chr5:167620600-167626800	Weak transcription	Brain Angular Gyrus	brain
8	chr5:167620800-167634200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167620800-167636400	Weak transcription	HSMMtube	muscle
10	chr5:167621200-167636600	Weak transcription	Brain Anterior Caudate	brain
11	chr5:167621400-167626800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:167621400-167636600	Weak transcription	Fetal Lung	lung
13	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
14	chr5:167621800-167629000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
16	chr5:167622200-167628000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167622200-167636200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:167622200-167636400	Weak transcription	Fetal Brain Male	brain
19	chr5:167622600-167636600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:167622800-167629800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:167622800-167634000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:167623000-167634200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:167624000-167631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:167624000-167636600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:167624600-167634400	Weak transcription	HMEC	breast
26	chr5:167624600-167646600	Weak transcription	Liver	Liver
27	chr5:167624800-167636800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr5:167625000-167628200	Strong transcription	Right Ventricle	heart
29	chr5:167625600-167627200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:167625600-167633200	Strong transcription	Left Ventricle	heart
31	chr5:167625600-167633400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:167626000-167628800	Strong transcription	HSMM	muscle
33	chr5:167626400-167636600	Weak transcription	Brain Cingulate Gyrus	brain

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