Variant report

Variant	rs136366
Chromosome Location	chr22:31126589-31126590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MEF2A	chr22:31126297-31126674	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31125004..31127534-chr22:31130840..31132394,2	K562	blood:
2	chr22:31124952..31127381-chr22:31127811..31130663,2	K562	blood:

Variant related genes	Relation type
MIR3200	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs136231	1.00[YRI][hapmap]
rs136314	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs136322	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs136326	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs136327	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136331	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136335	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136336	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136349	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136352	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136357	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs136362	0.92[EUR][1000 genomes]
rs136375	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2180079	1.00[YRI][hapmap]
rs5997763	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73154645	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31113800-31132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr22:31114000-31140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr22:31115200-31128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr22:31115400-31128800	Weak transcription	NHDF-Ad	bronchial
5	chr22:31115600-31149400	Weak transcription	Brain Hippocampus Middle	brain
6	chr22:31116400-31127600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr22:31116400-31128400	Weak transcription	Brain Substantia Nigra	brain
8	chr22:31117000-31127200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr22:31117000-31140200	Weak transcription	Pancreas	Pancrea
10	chr22:31118200-31127200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr22:31118200-31128600	Weak transcription	Brain Angular Gyrus	brain
12	chr22:31118200-31128600	Weak transcription	Brain Anterior Caudate	brain
13	chr22:31118400-31138600	Weak transcription	Fetal Brain Female	brain
14	chr22:31120800-31128600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr22:31123000-31137200	Weak transcription	Gastric	stomach
16	chr22:31123600-31131200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr22:31125200-31126600	Enhancers	K562	blood
18	chr22:31125400-31131200	Weak transcription	Fetal Intestine Small	intestine
19	chr22:31126200-31126600	Enhancers	GM12878-XiMat	blood
20	chr22:31126200-31126600	Enhancers	NH-A	brain
21	chr22:31126200-31130600	Enhancers	HUVEC	blood vessel
22	chr22:31126400-31126600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr22:31126400-31126800	Enhancers	HSMM	muscle
24	chr22:31126400-31129800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links