Variant report

Variant	rs136336
Chromosome Location	chr22:31160934-31160935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs136231	1.00[YRI][hapmap]
rs136314	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136322	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs136326	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs136327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136335	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136347	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136349	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136350	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs136357	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs136362	0.92[EUR][1000 genomes]
rs136366	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2180079	1.00[YRI][hapmap]
rs5997763	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73154645	0.96[EUR][1000 genomes]
rs73154653	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv2763260	chr22:31141521-31185000	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31140000-31185400	Weak transcription	Fetal Brain Female	brain
2	chr22:31150000-31173400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:31151200-31162600	Weak transcription	Spleen	Spleen
4	chr22:31151200-31167600	Weak transcription	Brain Substantia Nigra	brain
5	chr22:31151400-31167400	Weak transcription	Brain Hippocampus Middle	brain
6	chr22:31151400-31172800	Weak transcription	Brain Anterior Caudate	brain
7	chr22:31151600-31167200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr22:31151600-31167400	Weak transcription	Brain Angular Gyrus	brain
9	chr22:31155000-31167600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr22:31160200-31163400	Weak transcription	Fetal Intestine Small	intestine
11	chr22:31160200-31167800	Weak transcription	Right Atrium	heart
12	chr22:31160200-31172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr22:31160200-31177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:31160600-31161000	Enhancers	A549	lung
15	chr22:31160600-31161000	Enhancers	Hela-S3	cervix
16	chr22:31160600-31166600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr22:31160800-31162800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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