Variant report

Variant	rs1364400
Chromosome Location	chr7:137578767-137578768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137570646..137572266-chr7:137577966..137580275,2	K562	blood:
2	chr7:137501152..137502055-chr7:137578227..137578771,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1364401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2352134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6467722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6963420	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs6969436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73450493	1.00[ASN][1000 genomes]
rs73452618	0.98[ASN][1000 genomes]
rs7800157	0.96[ASN][1000 genomes]
rs7807499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137555600-137583200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr7:137557800-137583800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:137558400-137579200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
5	chr7:137567200-137583800	Strong transcription	Liver	Liver
6	chr7:137567400-137580200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:137567400-137583400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr7:137567400-137583800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:137567400-137584000	Strong transcription	Fetal Intestine Large	intestine
10	chr7:137568000-137584200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:137568600-137584000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:137568800-137578800	Weak transcription	Fetal Kidney	kidney
13	chr7:137570200-137579800	Weak transcription	A549	lung
14	chr7:137570400-137579200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:137570400-137584000	Weak transcription	Fetal Thymus	thymus
16	chr7:137570400-137585800	Weak transcription	Hela-S3	cervix
17	chr7:137570600-137579200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:137570600-137580600	Weak transcription	Esophagus	oesophagus
19	chr7:137570600-137580600	Weak transcription	Gastric	stomach
20	chr7:137570600-137583800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:137570600-137585400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr7:137571400-137579800	Weak transcription	NHEK	skin
23	chr7:137571400-137584000	Weak transcription	Thymus	Thymus
24	chr7:137571800-137588200	Weak transcription	Brain Angular Gyrus	brain
25	chr7:137572000-137583800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:137572000-137584000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:137572000-137584400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:137572000-137585800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:137572200-137578800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:137572200-137579000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:137572200-137581800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:137572200-137583400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:137572200-137583800	Weak transcription	Fetal Brain Male	brain
34	chr7:137572400-137584200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:137572800-137583400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:137573200-137583800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:137574000-137583600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:137574200-137578800	Strong transcription	Fetal Muscle Leg	muscle
39	chr7:137574200-137582200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:137574200-137584000	Strong transcription	Placenta	Placenta
41	chr7:137574400-137582000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:137574600-137583200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:137575200-137581000	Genic enhancers	HepG2	liver
44	chr7:137575200-137583800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:137575400-137579000	Strong transcription	Fetal Stomach	stomach
46	chr7:137575400-137581800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr7:137575400-137591800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:137575600-137578800	Strong transcription	GM12878-XiMat	blood
49	chr7:137575600-137580400	Weak transcription	Right Ventricle	heart
50	chr7:137575600-137580800	Weak transcription	Primary hematopoietic stem cells	blood

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