Variant report

Variant	rs7800157
Chromosome Location	chr7:137585562-137585563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137584438..137586090-chr7:137588352..137591212,2	MCF-7	breast:
2	chr7:137570597..137573428-chr7:137582615..137585579,3	K562	blood:
3	chr7:137583170..137588345-chr7:137688405..137691754,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1364400	0.96[ASN][1000 genomes]
rs1364401	0.96[ASN][1000 genomes]
rs2352134	0.96[ASN][1000 genomes]
rs6467722	0.92[ASN][1000 genomes]
rs6963420	0.84[ASN][1000 genomes]
rs6969436	0.96[ASN][1000 genomes]
rs73450493	0.96[ASN][1000 genomes]
rs73452618	0.98[ASN][1000 genomes]
rs7807499	0.92[ASN][1000 genomes]
rs7810085	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137558800-137588400	Weak transcription	Stomach Mucosa	stomach
2	chr7:137570400-137585800	Weak transcription	Hela-S3	cervix
3	chr7:137571800-137588200	Weak transcription	Brain Angular Gyrus	brain
4	chr7:137572000-137585800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:137575400-137591800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:137578400-137588200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:137579400-137588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:137580000-137588400	Weak transcription	Fetal Kidney	kidney
9	chr7:137581000-137588400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:137581000-137589800	Weak transcription	Spleen	Spleen
11	chr7:137584000-137588200	Strong transcription	Fetal Intestine Small	intestine
12	chr7:137584000-137588600	Strong transcription	Fetal Stomach	stomach
13	chr7:137584200-137585800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:137584200-137586000	Strong transcription	Lung	lung
15	chr7:137584200-137586200	Genic enhancers	Rectal Smooth Muscle	rectum
16	chr7:137584200-137586400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:137584200-137588600	Strong transcription	HepG2	liver
18	chr7:137584200-137588600	Strong transcription	HSMMtube	muscle
19	chr7:137584200-137588800	Strong transcription	NHEK	skin
20	chr7:137584200-137601000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:137584200-137612000	Weak transcription	Fetal Brain Male	brain
22	chr7:137584400-137585600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:137584400-137585800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:137584400-137585800	Weak transcription	Gastric	stomach
25	chr7:137584400-137586000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:137584400-137586000	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr7:137584400-137586200	Strong transcription	Esophagus	oesophagus
28	chr7:137584400-137586200	Strong transcription	NHLF	lung
29	chr7:137584400-137586400	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr7:137584400-137586600	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:137584400-137587400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:137584400-137588200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:137584400-137588200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr7:137584400-137588200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr7:137584400-137588200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:137584400-137588400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr7:137584400-137588400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr7:137584400-137588600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:137584400-137588600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:137584400-137588600	Weak transcription	Aorta	Aorta
41	chr7:137584400-137588600	Strong transcription	NH-A	brain
42	chr7:137584400-137589000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr7:137584400-137589800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:137584400-137590200	Weak transcription	Small Intestine	intestine
45	chr7:137584400-137591800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:137584400-137593200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr7:137584400-137597200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:137584400-137601600	Strong transcription	Fetal Intestine Large	intestine
49	chr7:137584600-137585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:137584600-137585600	Weak transcription	Primary T cells from cord blood	blood

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