Variant report

Variant	rs1364666
Chromosome Location	chr2:53459016-53459017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12471413	0.81[ASN][1000 genomes]
rs1863181	0.83[JPT][hapmap]
rs195578	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34827922	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751897	chr2:53358205-53475338	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1364666	PRDXDD1P	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53456600-53464000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr2:53458200-53459200	Enhancers	Fetal Heart	heart
3	chr2:53458200-53459800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:53458400-53460200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:53458600-53459800	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:53458600-53459800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:53458600-53459800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:53459000-53459200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:53459000-53459200	Flanking Active TSS	Dnd41	blood
10	chr2:53459000-53459600	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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