Variant report

Variant	rs34827922
Chromosome Location	chr2:53461782-53461783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:53460268..53462770-chr2:53469491..53472364,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11691596	0.92[ASN][1000 genomes]
rs124954	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13013224	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1364666	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751897	chr2:53358205-53475338	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53456600-53464000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr2:53459600-53464200	Enhancers	Dnd41	blood
3	chr2:53459800-53462600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:53460200-53463000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:53460800-53462800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:53461000-53462000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:53461000-53462000	Enhancers	Fetal Thymus	thymus
8	chr2:53461000-53462800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:53461000-53463000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:53461200-53462200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:53461200-53463000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:53461200-53463200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:53461400-53461800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:53461400-53462000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:53461400-53462200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr2:53461400-53463000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:53461400-53463000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:53461400-53463000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:53461400-53464000	Enhancers	Primary hematopoietic stem cells	blood
20	chr2:53461400-53464200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:53461600-53462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr2:53461600-53463600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:53461600-53463800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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