Variant report

Variant	rs1364870
Chromosome Location	chr4:152919913-152919914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11732516	1.00[JPT][hapmap]
rs13129634	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425398	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173405	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361440	1.00[JPT][hapmap]
rs28429024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360904	0.82[ASN][1000 genomes]
rs360905	0.82[ASN][1000 genomes]
rs360909	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs360911	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs360925	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360928	0.81[ASN][1000 genomes]
rs360934	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360935	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs360943	0.82[ASN][1000 genomes]
rs360944	0.82[ASN][1000 genomes]
rs360945	0.82[ASN][1000 genomes]
rs360946	0.82[ASN][1000 genomes]
rs360951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs360952	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs361146	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs566370	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs578738	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6844372	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845076	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs879169	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9991939	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1364870	FGG	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152914600-152920000	Weak transcription	Aorta	Aorta
2	chr4:152915200-152930200	Weak transcription	Right Atrium	heart
3	chr4:152915600-152924200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:152915600-152924200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:152915800-152924200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:152916000-152924400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:152918600-152920200	Enhancers	Brain Germinal Matrix	brain
8	chr4:152919000-152925200	Weak transcription	Gastric	stomach
9	chr4:152919200-152920200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:152919200-152924200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:152919400-152920400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:152919400-152920400	Enhancers	Fetal Heart	heart
13	chr4:152919600-152920200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:152919600-152930200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:152919800-152930200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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