Variant report

Variant	rs9991939
Chromosome Location	chr4:152915201-152915202
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13129634	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364870	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425398	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173405	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429024	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360904	0.82[ASN][1000 genomes]
rs360905	0.82[ASN][1000 genomes]
rs360925	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360928	0.81[ASN][1000 genomes]
rs360934	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs360935	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs360943	0.82[ASN][1000 genomes]
rs360944	0.82[ASN][1000 genomes]
rs360945	0.82[ASN][1000 genomes]
rs360946	0.82[ASN][1000 genomes]
rs360951	0.82[ASN][1000 genomes]
rs360952	0.82[ASN][1000 genomes]
rs361146	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs566370	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs578738	0.82[ASN][1000 genomes]
rs6844372	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845076	0.94[ASN][1000 genomes]
rs879169	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152910000-152915800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:152910400-152915600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr4:152910400-152915800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:152910400-152915800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr4:152910600-152915600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr4:152910600-152916000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr4:152911000-152915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:152911400-152915800	Enhancers	Dnd41	blood
9	chr4:152911600-152915400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:152912600-152915600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr4:152912800-152915400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:152912800-152915600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:152913400-152915600	Enhancers	Primary T cells from cord blood	blood
14	chr4:152913800-152919400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:152914000-152915600	Weak transcription	NHEK	skin
16	chr4:152914200-152919400	Weak transcription	Fetal Heart	heart
17	chr4:152914400-152919600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:152914600-152918400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:152914600-152918400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:152914600-152918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:152914600-152918600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:152914600-152919800	Weak transcription	Fetal Brain Female	brain
23	chr4:152914600-152920000	Weak transcription	Aorta	Aorta
24	chr4:152914800-152918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:152914800-152918800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:152915000-152918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:152915200-152930200	Weak transcription	Right Atrium	heart

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