Variant report

Variant	rs1365719
Chromosome Location	chr2:185419772-185419773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs359883	1.00[AMR][1000 genomes]
rs359897	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs384591	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs406498	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57126669	1.00[AMR][1000 genomes]
rs61400218	1.00[AMR][1000 genomes]
rs6760206	1.00[AMR][1000 genomes]
rs73978033	1.00[AMR][1000 genomes]
rs73978034	1.00[AMR][1000 genomes]
rs73978036	1.00[AMR][1000 genomes]
rs73978037	1.00[AMR][1000 genomes]
rs73978039	1.00[AMR][1000 genomes]
rs73978042	1.00[AMR][1000 genomes]
rs73978079	1.00[AMR][1000 genomes]
rs73980313	1.00[AMR][1000 genomes]
rs7601869	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875497	chr2:185134237-185474770	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875512	chr2:185300641-185474770	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv3449013	chr2:185419407-185422805	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185419000-185420400	Enhancers	HMEC	breast
2	chr2:185419200-185420000	Enhancers	NHEK	skin
3	chr2:185419200-185420200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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