Variant report

Variant	rs7601869
Chromosome Location	chr2:185538107-185538108
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10206367	1.00[EUR][1000 genomes]
rs11883625	1.00[EUR][1000 genomes]
rs11891366	1.00[EUR][1000 genomes]
rs11898003	1.00[EUR][1000 genomes]
rs11898500	1.00[EUR][1000 genomes]
rs11899942	1.00[EUR][1000 genomes]
rs13384922	1.00[EUR][1000 genomes]
rs13417933	1.00[EUR][1000 genomes]
rs13431559	1.00[EUR][1000 genomes]
rs1365719	1.00[AMR][1000 genomes]
rs2053563	1.00[EUR][1000 genomes]
rs359883	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs359890	0.89[YRI][hapmap]
rs359897	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs384591	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs406498	0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4618009	1.00[EUR][1000 genomes]
rs56200326	1.00[EUR][1000 genomes]
rs56797758	1.00[EUR][1000 genomes]
rs57126669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59038604	1.00[EUR][1000 genomes]
rs59102345	1.00[EUR][1000 genomes]
rs59318193	1.00[EUR][1000 genomes]
rs61400218	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6760206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041324	1.00[EUR][1000 genomes]
rs73041327	1.00[EUR][1000 genomes]
rs73043271	1.00[EUR][1000 genomes]
rs73978033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978036	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978039	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978042	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978079	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978095	1.00[EUR][1000 genomes]
rs73978098	1.00[EUR][1000 genomes]
rs73978101	1.00[EUR][1000 genomes]
rs73980304	1.00[EUR][1000 genomes]
rs73980313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980315	1.00[EUR][1000 genomes]
rs73980325	1.00[EUR][1000 genomes]
rs73980326	1.00[EUR][1000 genomes]
rs73980329	1.00[EUR][1000 genomes]
rs7579459	1.00[EUR][1000 genomes]
rs7585984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3384555	chr2:185537407-185542705	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185537800-185538800	Enhancers	Brain Germinal Matrix	brain

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