Variant report

Variant	rs11883625
Chromosome Location	chr2:185633465-185633466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11891366	1.00[EUR][1000 genomes]
rs11898003	1.00[EUR][1000 genomes]
rs11898500	1.00[EUR][1000 genomes]
rs11899942	1.00[EUR][1000 genomes]
rs13384922	1.00[EUR][1000 genomes]
rs13417933	1.00[EUR][1000 genomes]
rs359883	1.00[EUR][1000 genomes]
rs359897	1.00[EUR][1000 genomes]
rs384591	1.00[EUR][1000 genomes]
rs406498	1.00[EUR][1000 genomes]
rs4618009	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56200326	1.00[EUR][1000 genomes]
rs57126669	1.00[EUR][1000 genomes]
rs59102345	1.00[EUR][1000 genomes]
rs59318193	1.00[EUR][1000 genomes]
rs60535211	1.00[EUR][1000 genomes]
rs61400218	1.00[EUR][1000 genomes]
rs6760206	1.00[EUR][1000 genomes]
rs72901891	1.00[AFR][1000 genomes]
rs73043271	1.00[EUR][1000 genomes]
rs73978033	1.00[EUR][1000 genomes]
rs73978034	1.00[EUR][1000 genomes]
rs73978036	1.00[EUR][1000 genomes]
rs73978037	1.00[EUR][1000 genomes]
rs73978039	1.00[EUR][1000 genomes]
rs73978042	1.00[EUR][1000 genomes]
rs73978079	1.00[EUR][1000 genomes]
rs73978095	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73978098	1.00[EUR][1000 genomes]
rs73978101	1.00[EUR][1000 genomes]
rs73980304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980313	1.00[EUR][1000 genomes]
rs73980315	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73980326	1.00[EUR][1000 genomes]
rs73980329	1.00[EUR][1000 genomes]
rs7579459	1.00[EUR][1000 genomes]
rs7585984	1.00[EUR][1000 genomes]
rs7601869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185630600-185633600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:185632000-185636400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr2:185632200-185633800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:185632200-185634600	Enhancers	HUVEC	blood vessel
5	chr2:185632400-185633600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:185633200-185634600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:185633200-185634600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:185633400-185634400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links