Variant report
| Variant | rs56200326 |
|---|---|
| Chromosome Location | chr2:185695913-185695914 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11883625 | 1.00[EUR][1000 genomes] |
| rs11891366 | 1.00[EUR][1000 genomes] |
| rs11898003 | 1.00[EUR][1000 genomes] |
| rs11898500 | 1.00[EUR][1000 genomes] |
| rs11899942 | 1.00[EUR][1000 genomes] |
| rs359883 | 1.00[EUR][1000 genomes] |
| rs384591 | 1.00[EUR][1000 genomes] |
| rs406498 | 1.00[EUR][1000 genomes] |
| rs4618009 | 1.00[EUR][1000 genomes] |
| rs57126669 | 1.00[EUR][1000 genomes] |
| rs59102345 | 1.00[EUR][1000 genomes] |
| rs59318193 | 1.00[EUR][1000 genomes] |
| rs60535211 | 1.00[EUR][1000 genomes] |
| rs61400218 | 1.00[EUR][1000 genomes] |
| rs6760206 | 1.00[EUR][1000 genomes] |
| rs73043271 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73978033 | 1.00[EUR][1000 genomes] |
| rs73978034 | 1.00[EUR][1000 genomes] |
| rs73978036 | 1.00[EUR][1000 genomes] |
| rs73978037 | 1.00[EUR][1000 genomes] |
| rs73978039 | 1.00[EUR][1000 genomes] |
| rs73978042 | 1.00[EUR][1000 genomes] |
| rs73978079 | 1.00[EUR][1000 genomes] |
| rs73978095 | 1.00[EUR][1000 genomes] |
| rs73978098 | 1.00[EUR][1000 genomes] |
| rs73978101 | 1.00[EUR][1000 genomes] |
| rs73980304 | 1.00[EUR][1000 genomes] |
| rs73980313 | 1.00[EUR][1000 genomes] |
| rs73980315 | 1.00[EUR][1000 genomes] |
| rs73980325 | 1.00[EUR][1000 genomes] |
| rs73980326 | 1.00[EUR][1000 genomes] |
| rs73980329 | 1.00[EUR][1000 genomes] |
| rs7579459 | 1.00[EUR][1000 genomes] |
| rs7585984 | 1.00[EUR][1000 genomes] |
| rs7601869 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532412 | chr2:185347334-186108701 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv834484 | chr2:185550006-185762728 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv508189 | chr2:185695276-185701287 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:185695400-185697200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
