Variant report

Variant	rs1366632
Chromosome Location	chr5:36635565-36635566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36624852..36627710-chr5:36634802..36636400,2	K562	blood:
2	chr5:36629975..36633425-chr5:36634181..36637706,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11954014	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs11957945	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12518875	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12659371	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13166160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2033267	0.89[ASN][1000 genomes]
rs2115522	0.87[ASN][1000 genomes]
rs34789636	0.88[ASN][1000 genomes]
rs366597	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3776569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4869486	0.81[ASW][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4869677	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36608800-36639600	Weak transcription	Esophagus	oesophagus
2	chr5:36616800-36651200	Weak transcription	Psoas Muscle	Psoas
3	chr5:36620800-36638000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:36624600-36637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:36628600-36641000	Weak transcription	Fetal Brain Male	brain
6	chr5:36629400-36637800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:36630400-36638200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:36630400-36638400	Weak transcription	Fetal Intestine Large	intestine
9	chr5:36630600-36641400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:36630800-36638200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:36630800-36646200	Weak transcription	NHDF-Ad	bronchial
12	chr5:36631000-36635800	Weak transcription	Placenta	Placenta
13	chr5:36631000-36637600	Strong transcription	HSMM	muscle
14	chr5:36631000-36638000	Weak transcription	Right Ventricle	heart
15	chr5:36631000-36638200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:36631000-36638400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:36631000-36654400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:36631200-36638000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:36631200-36638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:36631200-36639200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:36631400-36638200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:36631400-36641000	Weak transcription	Osteobl	bone
23	chr5:36631600-36636800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:36631800-36635800	Weak transcription	NHEK	skin
25	chr5:36631800-36641000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:36632000-36635800	Weak transcription	HMEC	breast
27	chr5:36632000-36638200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr5:36632200-36636800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:36632200-36654800	Weak transcription	Fetal Brain Female	brain
30	chr5:36632600-36635600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:36632600-36636800	Weak transcription	Brain Angular Gyrus	brain
32	chr5:36632600-36639200	Weak transcription	Brain Hippocampus Middle	brain
33	chr5:36632600-36641200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr5:36632600-36651800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:36632600-36654600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr5:36632800-36635800	Weak transcription	Fetal Heart	heart
37	chr5:36633200-36636200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr5:36633400-36640200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:36633600-36638400	Weak transcription	Brain Substantia Nigra	brain
40	chr5:36633800-36639600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:36634000-36635600	Weak transcription	Hela-S3	cervix
42	chr5:36634000-36652200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:36634800-36635600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr5:36635000-36635600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:36635000-36638400	Strong transcription	Fetal Muscle Leg	muscle
46	chr5:36635200-36635600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:36635200-36635800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:36635200-36636800	Strong transcription	Brain Anterior Caudate	brain
49	chr5:36635200-36637600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:36635200-36638800	Strong transcription	Brain Inferior Temporal Lobe	brain

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