Variant report

Variant	rs34789636
Chromosome Location	chr5:36621502-36621503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36614403..36616271-chr5:36619244..36622232,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11954014	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12518875	0.82[ASN][1000 genomes]
rs12659371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166160	0.86[ASN][1000 genomes]
rs1366632	0.88[ASN][1000 genomes]
rs2033267	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2115522	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3776569	0.83[ASN][1000 genomes]
rs4869486	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869677	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36608800-36639600	Weak transcription	Esophagus	oesophagus
2	chr5:36610600-36629800	Weak transcription	NHDF-Ad	bronchial
3	chr5:36611000-36633600	Weak transcription	Brain Germinal Matrix	brain
4	chr5:36611200-36630000	Weak transcription	Right Ventricle	heart
5	chr5:36612200-36623400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:36613600-36624400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:36614000-36624000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:36614000-36629600	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:36615000-36624000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:36615000-36629600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:36615200-36621800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:36615200-36624200	Weak transcription	HSMM	muscle
13	chr5:36615200-36627600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:36615400-36621800	Weak transcription	Brain Substantia Nigra	brain
15	chr5:36615400-36630000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:36615400-36630200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:36615800-36629800	Weak transcription	Placenta	Placenta
18	chr5:36616000-36624000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:36616800-36651200	Weak transcription	Psoas Muscle	Psoas
20	chr5:36618200-36629400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:36618400-36621600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:36618800-36624000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:36619200-36629800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:36619400-36621800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:36619400-36629200	Weak transcription	Hela-S3	cervix
26	chr5:36619600-36621800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:36619600-36627400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:36619600-36629000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:36619600-36630000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:36619800-36629000	Weak transcription	HMEC	breast
31	chr5:36619800-36629800	Weak transcription	NHEK	skin
32	chr5:36620200-36622200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
33	chr5:36620600-36624000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:36620600-36627800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:36620600-36628000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:36620600-36630000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:36620600-36633600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr5:36620800-36621600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:36620800-36621800	Weak transcription	Fetal Heart	heart
40	chr5:36620800-36622000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:36620800-36622000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:36620800-36629800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr5:36620800-36629800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr5:36620800-36638000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:36621200-36621600	Enhancers	Brain Hippocampus Middle	brain
46	chr5:36621400-36621600	Enhancers	Left Ventricle	heart
47	chr5:36621400-36621800	Enhancers	Brain Anterior Caudate	brain
48	chr5:36621400-36622200	Enhancers	Brain Angular Gyrus	brain
49	chr5:36621400-36622400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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