Variant report

Variant	rs1366637
Chromosome Location	chr5:36598266-36598267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36598036..36602737-chr5:36604248..36607271,4	K562	blood:

Variant related genes	Relation type
ENSG00000079215	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11743024	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13154397	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs13155110	1.00[JPT][hapmap]
rs13162772	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13165565	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13178449	0.82[EUR][1000 genomes]
rs13179272	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13186061	0.81[AMR][1000 genomes]
rs2731914	1.00[JPT][hapmap]
rs2731916	0.86[JPT][hapmap]
rs2731917	1.00[JPT][hapmap]
rs34000615	0.81[AMR][1000 genomes]
rs6451302	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36591200-36606200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:36596200-36598400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr5:36597000-36600400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:36597000-36603000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:36597000-36605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:36597000-36606200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:36597200-36600400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:36597200-36600400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:36597200-36601000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:36597200-36605200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:36597800-36598400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:36597800-36598400	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr5:36597800-36598400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr5:36597800-36598400	Enhancers	Fetal Muscle Leg	muscle
15	chr5:36597800-36598600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:36597800-36598800	Enhancers	Brain Angular Gyrus	brain
17	chr5:36597800-36600000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:36598000-36598400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:36598000-36598400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:36598000-36598400	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr5:36598000-36598400	Flanking Active TSS	Brain Substantia Nigra	brain
22	chr5:36598000-36599000	Enhancers	Brain Germinal Matrix	brain
23	chr5:36598000-36600600	Weak transcription	Fetal Kidney	kidney
24	chr5:36598200-36598400	Enhancers	Adipose Nuclei	Adipose
25	chr5:36598200-36598400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:36598200-36598600	Enhancers	Brain Anterior Caudate	brain
27	chr5:36598200-36600200	Weak transcription	Fetal Lung	lung
28	chr5:36598200-36603000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:36598200-36603000	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links