Variant report

Variant	rs1369227
Chromosome Location	chr8:69553700-69553701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69552027..69553866-chr8:69558077..69560786,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1369226	0.81[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1434924	0.80[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs1434930	0.80[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs1434931	0.80[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs1434933	0.90[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs1583424	0.88[ASN][1000 genomes]
rs16934789	0.85[JPT][hapmap]
rs16934800	0.93[ASN][1000 genomes]
rs35678561	0.93[ASN][1000 genomes]
rs3857960	0.93[ASN][1000 genomes]
rs3905598	0.91[ASN][1000 genomes]
rs4009115	0.93[ASN][1000 genomes]
rs4380922	0.93[ASN][1000 genomes]
rs7017399	0.81[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7825271	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs920016	0.81[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs920017	0.90[ASN][1000 genomes]
rs987125	0.80[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890984	chr8:69482825-69556111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69551400-69555000	Weak transcription	HSMMtube	muscle
3	chr8:69551600-69554200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:69551600-69554600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:69552000-69553800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:69552000-69554000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:69552000-69554200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:69552200-69554200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:69552600-69553800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:69552800-69553800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr8:69552800-69554200	Enhancers	Fetal Lung	lung
12	chr8:69553000-69553800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:69553000-69553800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr8:69553200-69553800	Enhancers	NHLF	lung
15	chr8:69553200-69554000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:69553200-69560400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:69553200-69560800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:69553200-69560800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr8:69553400-69553800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:69553600-69554200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:69553600-69554200	Enhancers	HUES64 Cell Line	embryonic stem cell

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