Variant report

Variant	rs7825271
Chromosome Location	chr8:69563695-69563696
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1369226	0.83[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1369227	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1434924	0.84[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs1434930	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1434931	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1434933	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1583424	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16934789	0.84[CEU][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs16934800	0.84[ASN][1000 genomes]
rs35678561	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857960	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3905598	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4009115	0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4380922	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7017399	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs920016	0.84[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs920017	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs987125	0.84[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv972529	chr8:69561897-69568157	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69545200-69572800	Weak transcription	Aorta	Aorta
2	chr8:69563600-69563800	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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