Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10182159	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10201276	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1369531	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1369532	1.00[YRI][hapmap]
rs1435589	0.82[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1435591	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs1435592	1.00[YRI][hapmap]
rs1435601	1.00[GIH][hapmap]
rs1435604	0.95[GIH][hapmap]
rs1529870	0.95[GIH][hapmap]
rs2033630	0.95[GIH][hapmap]
rs2890622	0.95[GIH][hapmap]
rs4662566	0.95[GIH][hapmap]
rs6429936	0.95[GIH][hapmap]
rs6759660	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7558202	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7565562	1.00[CEU][hapmap]
rs7565791	0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs874529	0.95[GIH][hapmap]
rs916468	0.95[GIH][hapmap]
rs920104	0.95[GIH][hapmap]
rs9287327	0.95[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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