Variant report

Variant	rs1435601
Chromosome Location	chr2:142666003-142666004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142664496..142667216-chr2:142887866..142889638,2	MCF-7	breast:
2	chr2:142265321..142267918-chr2:142664161..142666622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168702	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10166477	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10179103	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10928129	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10928130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10928131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1369527	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1369529	1.00[GIH][hapmap]
rs1375617	1.00[CHD][hapmap]
rs1435585	0.82[EUR][1000 genomes]
rs1435587	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435589	0.83[GIH][hapmap]
rs1435591	1.00[GIH][hapmap]
rs1435599	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435600	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435604	0.95[GIH][hapmap]
rs1529870	0.95[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.92[YRI][hapmap]
rs1898019	0.86[YRI][hapmap]
rs2033630	0.95[GIH][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2033631	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2033632	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2164337	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2381170	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2890622	0.95[GIH][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4662308	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4662559	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4662566	0.95[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap]
rs6429928	0.92[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6429929	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6429936	0.95[GIH][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap]
rs6721127	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7565791	1.00[GIH][hapmap]
rs7566248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7566490	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7578697	0.86[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7578799	0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7592904	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs874529	0.95[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.86[YRI][hapmap]
rs892884	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs892885	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs916468	0.95[GIH][hapmap]
rs920102	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920103	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920104	0.95[GIH][hapmap];0.84[MKK][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920105	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9287327	0.95[GIH][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap]
rs983540	1.00[LWK][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links