Variant report

Variant	rs2164337
Chromosome Location	chr2:142698844-142698845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10166477	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10179103	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10185196	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs10202050	0.82[CEU][hapmap]
rs10928129	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10928130	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10928131	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1369527	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1369541	1.00[CEU][hapmap]
rs1369543	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs1369544	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs1435585	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435587	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435588	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435599	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1435600	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1435601	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1435604	1.00[CEU][hapmap]
rs1529870	1.00[CEU][hapmap]
rs1898017	1.00[CEU][hapmap]
rs1898019	1.00[CEU][hapmap]
rs2033630	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2033631	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2033632	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2053171	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs2381168	0.89[CEU][hapmap]
rs2381170	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2890622	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4662308	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4662559	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4662566	1.00[CEU][hapmap]
rs62157573	0.80[EUR][1000 genomes]
rs6429928	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6429929	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6429932	1.00[CEU][hapmap]
rs6429936	1.00[CEU][hapmap]
rs6429937	1.00[CEU][hapmap]
rs6705049	0.86[CEU][hapmap]
rs6721127	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6747481	1.00[CEU][hapmap]
rs7566248	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7566490	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7570185	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs7578697	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7578799	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7584045	1.00[CEU][hapmap]
rs7584130	1.00[CEU][hapmap]
rs7592904	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs874529	1.00[CEU][hapmap]
rs892884	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs892885	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs916466	1.00[CEU][hapmap]
rs916468	1.00[CEU][hapmap]
rs920102	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920103	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920104	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920105	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920108	0.89[CEU][hapmap]
rs920110	0.89[CEU][hapmap]
rs9287327	1.00[CEU][hapmap]
rs983540	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142697200-142700000	Enhancers	Brain Substantia Nigra	brain
2	chr2:142698000-142699400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:142698000-142700400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:142698200-142699600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:142698200-142700400	Enhancers	Brain Anterior Caudate	brain
6	chr2:142698400-142699200	Enhancers	Brain Cingulate Gyrus	brain
7	chr2:142698400-142699200	Enhancers	Brain Hippocampus Middle	brain
8	chr2:142698600-142699800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:142698800-142699200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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