Variant report

Variant	rs1435587
Chromosome Location	chr2:142683539-142683540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142680757..142682303-chr2:142682343..142684939,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10166477	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10179103	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10185196	1.00[CEU][hapmap]
rs10928129	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10928130	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10928131	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1369527	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1369541	1.00[CEU][hapmap]
rs1369543	1.00[CEU][hapmap]
rs1369544	1.00[CEU][hapmap]
rs1435585	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1435588	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435599	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435600	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435601	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435604	1.00[CEU][hapmap]
rs1529870	1.00[CEU][hapmap]
rs1898017	1.00[CEU][hapmap]
rs1898019	1.00[CEU][hapmap]
rs2033630	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2033631	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2033632	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2053171	1.00[CEU][hapmap]
rs2164337	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2381170	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2890622	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4662308	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4662559	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4662566	1.00[CEU][hapmap]
rs6429928	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6429929	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6429932	1.00[CEU][hapmap]
rs6429936	1.00[CEU][hapmap]
rs6429937	1.00[CEU][hapmap]
rs6721127	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6747481	1.00[CEU][hapmap]
rs7566248	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7566490	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570185	1.00[CEU][hapmap]
rs7578697	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7578799	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7584045	1.00[CEU][hapmap]
rs7584130	1.00[CEU][hapmap]
rs7592904	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs874529	1.00[CEU][hapmap]
rs892884	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs892885	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs916466	1.00[CEU][hapmap]
rs916468	1.00[CEU][hapmap]
rs920102	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs920103	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs920104	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs920105	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9287327	1.00[CEU][hapmap]
rs983540	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142681800-142683800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:142682200-142685200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:142682400-142685200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:142682400-142685200	Weak transcription	HMEC	breast
5	chr2:142683000-142688400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:142683200-142683600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:142683400-142684600	Weak transcription	NHDF-Ad	bronchial
8	chr2:142683400-142688000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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