Variant report

Variant	rs10166477
Chromosome Location	chr2:142699779-142699780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10179103	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10928129	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10928130	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10928131	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1369527	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435585	1.00[EUR][1000 genomes]
rs1435587	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435588	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435599	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1435600	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1435601	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2033630	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2033631	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2033632	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2164337	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2381170	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2890622	0.99[EUR][1000 genomes]
rs4662308	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4662559	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62157573	0.80[EUR][1000 genomes]
rs6429928	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6429929	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6721127	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7566248	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7566490	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7578697	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7578799	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7592904	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs892884	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs892885	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920102	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920103	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920104	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs920105	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs983540	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142697200-142700000	Enhancers	Brain Substantia Nigra	brain
2	chr2:142698000-142700400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:142698200-142700400	Enhancers	Brain Anterior Caudate	brain
4	chr2:142698600-142699800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:142699200-142700200	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:142699200-142700200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:142699400-142701600	Weak transcription	Brain Inferior Temporal Lobe	brain

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