Variant report

Variant	rs7578697
Chromosome Location	chr2:142660793-142660794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10166477	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10179103	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10185196	0.87[CEU][hapmap]
rs10928129	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10928130	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10928131	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1369527	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1369543	0.87[CEU][hapmap]
rs1369544	0.87[CEU][hapmap]
rs1435585	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1435587	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435588	0.87[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1435599	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435600	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435601	0.86[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1435604	0.86[CEU][hapmap]
rs1529870	0.86[CEU][hapmap];0.92[YRI][hapmap]
rs1898017	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs1898019	0.87[CEU][hapmap];0.88[YRI][hapmap]
rs2033630	0.86[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2033631	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2033632	0.87[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2053171	0.87[CEU][hapmap]
rs2164337	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2381168	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs2381170	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2890622	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4662308	0.87[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4662559	1.00[CEU][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4662566	0.86[CEU][hapmap]
rs6429928	0.85[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6429929	1.00[CEU][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6429932	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs6429936	0.86[CEU][hapmap]
rs6705049	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs6721127	0.87[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6747481	0.87[CEU][hapmap]
rs7566248	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7566490	0.87[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7570185	0.87[CEU][hapmap]
rs7578799	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7584045	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs7584130	0.87[CEU][hapmap]
rs7592904	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs874529	0.86[CEU][hapmap];0.86[YRI][hapmap]
rs892884	0.87[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs892885	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs916466	0.86[CEU][hapmap]
rs916468	0.86[CEU][hapmap]
rs920102	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920103	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920104	0.86[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920105	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs920107	0.87[YRI][hapmap]
rs920108	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs920109	0.82[CEU][hapmap]
rs920110	1.00[CEU][hapmap]
rs9287327	0.86[CEU][hapmap]
rs983540	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142659000-142664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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