Variant report
| Variant | rs7584130 |
|---|---|
| Chromosome Location | chr2:142672905-142672906 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:54)
| rs_ID | r2[population] |
|---|---|
| rs10179103 | 1.00[CEU][hapmap] |
| rs10185196 | 1.00[CEU][hapmap] |
| rs10202050 | 0.82[CEU][hapmap] |
| rs10928131 | 1.00[CEU][hapmap] |
| rs1369527 | 1.00[CEU][hapmap] |
| rs1369541 | 1.00[CEU][hapmap] |
| rs1369543 | 1.00[CEU][hapmap] |
| rs1369544 | 1.00[CEU][hapmap] |
| rs1435585 | 1.00[CEU][hapmap] |
| rs1435587 | 1.00[CEU][hapmap] |
| rs1435588 | 1.00[CEU][hapmap] |
| rs1435599 | 0.89[CEU][hapmap] |
| rs1435600 | 0.89[CEU][hapmap] |
| rs1435604 | 1.00[CEU][hapmap] |
| rs1529870 | 1.00[CEU][hapmap] |
| rs1898017 | 1.00[CEU][hapmap] |
| rs1898019 | 1.00[CEU][hapmap] |
| rs2033630 | 1.00[CEU][hapmap] |
| rs2033632 | 1.00[CEU][hapmap] |
| rs2053171 | 1.00[CEU][hapmap] |
| rs2164337 | 1.00[CEU][hapmap] |
| rs2381168 | 0.89[CEU][hapmap] |
| rs2381170 | 0.89[CEU][hapmap] |
| rs2890622 | 1.00[CEU][hapmap] |
| rs4662308 | 1.00[CEU][hapmap] |
| rs4662559 | 0.87[CEU][hapmap] |
| rs4662566 | 1.00[CEU][hapmap] |
| rs6429928 | 0.86[YRI][hapmap] |
| rs6429929 | 0.88[CEU][hapmap];0.95[YRI][hapmap] |
| rs6429932 | 1.00[CEU][hapmap] |
| rs6429936 | 1.00[CEU][hapmap] |
| rs6429937 | 1.00[CEU][hapmap] |
| rs6705049 | 0.86[CEU][hapmap];1.00[YRI][hapmap] |
| rs6721127 | 1.00[CEU][hapmap] |
| rs6747481 | 1.00[CEU][hapmap] |
| rs7566490 | 1.00[CEU][hapmap] |
| rs7570185 | 1.00[CEU][hapmap] |
| rs7578697 | 0.87[CEU][hapmap] |
| rs7578799 | 0.89[CEU][hapmap] |
| rs7584045 | 1.00[CEU][hapmap] |
| rs7592904 | 1.00[CEU][hapmap] |
| rs874529 | 1.00[CEU][hapmap] |
| rs892884 | 1.00[CEU][hapmap] |
| rs916466 | 1.00[CEU][hapmap] |
| rs916468 | 1.00[CEU][hapmap] |
| rs920102 | 1.00[CEU][hapmap] |
| rs920103 | 1.00[CEU][hapmap] |
| rs920104 | 1.00[CEU][hapmap] |
| rs920105 | 1.00[CEU][hapmap] |
| rs920107 | 1.00[YRI][hapmap] |
| rs920108 | 0.89[CEU][hapmap] |
| rs920110 | 0.89[CEU][hapmap] |
| rs9287327 | 1.00[CEU][hapmap] |
| rs983540 | 0.89[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv583238 | chr2:142646363-142739121 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875251 | chr2:142656200-142701852 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| 4 | nsv875252 | chr2:142666003-142768518 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
