Variant report

Variant	rs10202050
Chromosome Location	chr2:142731390-142731391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10179103	0.82[CEU][hapmap]
rs10185196	0.82[CEU][hapmap]
rs1369527	0.82[CEU][hapmap]
rs1369543	0.82[CEU][hapmap]
rs1369544	0.80[CEU][hapmap]
rs1435585	0.82[CEU][hapmap]
rs1435588	0.82[CEU][hapmap]
rs1435604	0.81[CEU][hapmap];0.81[MKK][hapmap]
rs1529870	0.81[CEU][hapmap]
rs1898017	0.80[CEU][hapmap]
rs1898019	0.82[CEU][hapmap]
rs2033630	0.81[CEU][hapmap]
rs2033632	0.82[CEU][hapmap]
rs2053171	0.82[CEU][hapmap]
rs2164337	0.82[CEU][hapmap]
rs2890622	0.81[CEU][hapmap]
rs4662308	0.82[CEU][hapmap]
rs4662566	0.81[CEU][hapmap]
rs6429932	0.80[CEU][hapmap]
rs6429936	0.81[CEU][hapmap]
rs6721127	0.82[CEU][hapmap]
rs6747481	0.80[CEU][hapmap]
rs7566490	0.82[CEU][hapmap]
rs7570185	0.82[CEU][hapmap]
rs7584045	0.82[CEU][hapmap]
rs7584130	0.82[CEU][hapmap]
rs7592904	0.82[CEU][hapmap]
rs874529	0.81[CEU][hapmap]
rs892884	0.82[CEU][hapmap]
rs916466	0.80[CEU][hapmap]
rs916468	0.81[CEU][hapmap];0.81[MKK][hapmap]
rs920104	0.81[CEU][hapmap]
rs920105	0.82[CEU][hapmap]
rs9287327	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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