Variant report

Variant	rs1370138
Chromosome Location	chr6:81163409-81163410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1436870	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3011307	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577046	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs634504	0.93[YRI][hapmap]
rs645270	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343999	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9344001	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81142400-81163800	Weak transcription	Ovary	ovary
2	chr6:81154400-81165800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:81156400-81166800	Weak transcription	Aorta	Aorta
4	chr6:81156400-81167000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:81156400-81167000	Weak transcription	Pancreas	Pancrea
6	chr6:81158000-81166400	Weak transcription	Liver	Liver
7	chr6:81162000-81164200	Weak transcription	Stomach Mucosa	stomach
8	chr6:81162600-81165600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:81162800-81164200	Enhancers	HUVEC	blood vessel
10	chr6:81162800-81165400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:81162800-81166200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:81162800-81168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:81162800-81168400	Enhancers	HMEC	breast
14	chr6:81163000-81163600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:81163000-81165800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
17	chr6:81163200-81164200	Enhancers	NHEK	skin
18	chr6:81163200-81164600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:81163200-81166800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:81163200-81168200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:81163200-81169800	Weak transcription	Fetal Heart	heart
22	chr6:81163400-81164600	Enhancers	HSMMtube	muscle
23	chr6:81163400-81165000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:81163400-81165000	Enhancers	HSMM	muscle
25	chr6:81163400-81165200	Enhancers	NH-A	brain
26	chr6:81163400-81165200	Enhancers	Osteobl	bone
27	chr6:81163400-81165400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:81163400-81165400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:81163400-81165400	Enhancers	NHDF-Ad	bronchial
30	chr6:81163400-81165800	Enhancers	NHLF	lung
31	chr6:81163400-81166800	Weak transcription	Brain Angular Gyrus	brain
32	chr6:81163400-81167200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:81163400-81168400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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