Variant report

Variant	rs634504
Chromosome Location	chr6:81170090-81170091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81168885..81171049-chr6:81175786..81177907,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260645	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11961045	0.97[ASN][1000 genomes]
rs1370137	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436867	0.91[ASN][1000 genomes]
rs1436868	0.94[ASN][1000 genomes]
rs1436871	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1698337	0.91[ASN][1000 genomes]
rs1821786	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836961	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1865917	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164606	0.91[ASN][1000 genomes]
rs2164607	0.91[ASN][1000 genomes]
rs2164608	0.91[ASN][1000 genomes]
rs2164610	0.84[EUR][1000 genomes]
rs2322770	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2917607	0.91[ASN][1000 genomes]
rs2917608	0.91[ASN][1000 genomes]
rs3011300	0.91[ASN][1000 genomes]
rs3011301	0.94[ASN][1000 genomes]
rs3011302	0.94[ASN][1000 genomes]
rs3011304	0.91[ASN][1000 genomes]
rs4635986	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4637601	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs484264	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs484560	0.91[ASN][1000 genomes]
rs485088	0.94[ASN][1000 genomes]
rs486271	0.91[ASN][1000 genomes]
rs487328	0.91[ASN][1000 genomes]
rs488098	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs505678	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506825	0.91[ASN][1000 genomes]
rs508759	0.91[ASN][1000 genomes]
rs514517	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs515347	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520139	0.91[ASN][1000 genomes]
rs522183	0.91[ASN][1000 genomes]
rs526071	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528886	0.86[ASN][1000 genomes]
rs532709	0.91[ASN][1000 genomes]
rs535350	0.91[ASN][1000 genomes]
rs536598	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538905	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs540896	0.91[ASN][1000 genomes]
rs541446	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs548876	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552895	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs553433	0.91[ASN][1000 genomes]
rs558478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559034	0.91[ASN][1000 genomes]
rs560068	0.91[ASN][1000 genomes]
rs560909	0.91[ASN][1000 genomes]
rs56112536	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs564757	0.91[ASN][1000 genomes]
rs567324	1.00[CHB][hapmap]
rs568155	0.91[ASN][1000 genomes]
rs568253	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs572007	0.91[ASN][1000 genomes]
rs574098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577129	0.91[ASN][1000 genomes]
rs577892	0.91[ASN][1000 genomes]
rs580525	0.91[ASN][1000 genomes]
rs581715	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs582966	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584904	0.84[EUR][1000 genomes]
rs585229	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586593	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs586605	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs588876	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594567	0.91[ASN][1000 genomes]
rs596723	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs597937	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs598382	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs600549	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs610292	0.91[ASN][1000 genomes]
rs612684	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs613998	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs614483	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs615815	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs622089	0.91[ASN][1000 genomes]
rs622117	0.91[ASN][1000 genomes]
rs622849	0.91[ASN][1000 genomes]
rs623286	0.91[ASN][1000 genomes]
rs623367	0.91[ASN][1000 genomes]
rs624645	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs625136	0.91[ASN][1000 genomes]
rs630687	0.91[ASN][1000 genomes]
rs631481	0.89[ASN][1000 genomes]
rs632397	0.91[ASN][1000 genomes]
rs642613	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645216	0.91[ASN][1000 genomes]
rs6454158	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs654625	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs655350	0.91[ASN][1000 genomes]
rs656381	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs661076	0.91[ASN][1000 genomes]
rs661119	0.91[ASN][1000 genomes]
rs66969849	0.91[ASN][1000 genomes]
rs67220910	0.91[ASN][1000 genomes]
rs674031	0.91[ASN][1000 genomes]
rs675769	0.91[ASN][1000 genomes]
rs681085	0.84[EUR][1000 genomes]
rs687203	0.91[ASN][1000 genomes]
rs73473458	0.91[ASN][1000 genomes]
rs7752861	0.88[ASN][1000 genomes]
rs7753440	0.88[ASN][1000 genomes]
rs7757432	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7772873	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893126	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294175	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343998	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352834	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352838	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9361616	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9361617	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443781	0.91[ASN][1000 genomes]
rs9449007	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
2	chr6:81167600-81170200	Weak transcription	HSMMtube	muscle
3	chr6:81167600-81175000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:81167600-81181400	Weak transcription	Ovary	ovary
5	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
6	chr6:81167800-81176200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:81168200-81170200	Weak transcription	HSMM	muscle
8	chr6:81168200-81172800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:81168200-81187000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:81168400-81175200	Weak transcription	Fetal Lung	lung
11	chr6:81169600-81171200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:81169800-81170600	Enhancers	Fetal Heart	heart
13	chr6:81169800-81171000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:81170000-81170400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:81170000-81170600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:81170000-81170600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:81170000-81170600	Enhancers	Hela-S3	cervix
18	chr6:81170000-81170800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:81170000-81170800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:81170000-81170800	Enhancers	HUVEC	blood vessel
21	chr6:81170000-81170800	Enhancers	NHDF-Ad	bronchial
22	chr6:81170000-81170800	Enhancers	NHEK	skin
23	chr6:81170000-81170800	Enhancers	Osteobl	bone

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