Variant report

Variant	rs1436871
Chromosome Location	chr6:81134389-81134390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs11961045	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1370137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1436867	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1436868	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1698337	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816564	0.90[CEU][hapmap]
rs1821786	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1836961	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1865917	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164606	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164607	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164608	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164610	0.98[EUR][1000 genomes]
rs2322770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2917607	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2917608	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3011299	0.84[EUR][1000 genomes]
rs3011300	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3011301	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3011302	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3011304	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4635986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637601	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484264	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs484560	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs485088	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs486271	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs487328	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs488098	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs505678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs506825	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs508759	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs512946	0.84[EUR][1000 genomes]
rs514517	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs515347	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs520139	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs522183	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs526071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs528886	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs532709	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs535350	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs536598	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs538905	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs540896	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs541446	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs548876	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs553433	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs558478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs559034	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs560068	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs560909	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56112536	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs564757	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs567324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs568155	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs568253	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs572007	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs574098	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs577129	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs577892	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs580525	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs581715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs582966	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs584904	0.88[CEU][hapmap];0.98[EUR][1000 genomes]
rs585229	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs586593	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs586605	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs588876	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs593167	0.90[CEU][hapmap]
rs594567	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs596723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs597937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs597950	0.91[EUR][1000 genomes]
rs598382	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs600549	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs610292	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs612684	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs613998	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs614483	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs615815	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs622089	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs622117	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs622849	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs623286	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs623367	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs624645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs625136	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs630687	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs631481	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs632397	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs634504	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs642613	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs645216	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454158	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs654625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs654955	0.90[CEU][hapmap]
rs655350	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs656381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs661076	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs661119	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66969849	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67220910	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs674031	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs675769	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs681085	0.98[EUR][1000 genomes]
rs687203	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs694288	0.88[CEU][hapmap]
rs73473458	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7752861	0.83[ASN][1000 genomes]
rs7753440	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7757432	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs893126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343998	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352834	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9352838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361616	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361617	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9443781	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9449007	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81130600-81134800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81132400-81134400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:81132400-81135400	Weak transcription	Liver	Liver
4	chr6:81132400-81135600	Weak transcription	Aorta	Aorta
5	chr6:81132400-81142800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:81132800-81134400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:81133200-81134400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:81133400-81135000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:81133400-81135400	Enhancers	NHDF-Ad	bronchial
10	chr6:81133400-81136000	Enhancers	HSMM	muscle
11	chr6:81133600-81135400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:81133600-81136000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:81133800-81135800	Enhancers	NHLF	lung
14	chr6:81134200-81134400	Enhancers	NH-A	brain
15	chr6:81134200-81136000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:81134200-81136000	Enhancers	Osteobl	bone

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