Variant report

Variant	rs1370137
Chromosome Location	chr6:81163423-81163424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs11961045	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1436867	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1436868	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1436871	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1698337	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1821786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836961	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1865917	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164606	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164607	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164608	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164610	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2322770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2917607	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2917608	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3011299	0.84[EUR][1000 genomes]
rs3011300	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3011301	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3011302	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3011304	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4635986	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4637601	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs484264	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs484560	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs485088	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs486271	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs487328	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488098	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs505678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506825	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs508759	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs512946	0.84[EUR][1000 genomes]
rs514517	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs515347	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520139	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs522183	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs526071	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528886	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs532709	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs535350	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs536598	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538905	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs540896	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs541446	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs548876	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553433	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs558478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559034	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs560068	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs560909	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56112536	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs564757	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs568155	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs568253	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs572007	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs574098	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577129	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs577892	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs580525	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs581715	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs582966	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs584904	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs585229	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs586593	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs586605	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs588876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594567	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs597937	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs597950	0.91[EUR][1000 genomes]
rs598382	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs600549	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs610292	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs612684	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs613998	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs614483	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs615815	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs622089	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs622117	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs622849	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs623286	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs623367	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs624645	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs625136	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs630687	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs631481	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs632397	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs634504	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645216	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6454158	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs654625	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs655350	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs656381	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661076	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs661119	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66969849	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67220910	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs674031	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs675769	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs681085	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs687203	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73473458	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752861	0.88[ASN][1000 genomes]
rs7753440	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7757432	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7772873	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893126	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9294175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343998	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352834	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352838	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9361616	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9361617	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443781	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9449007	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81142400-81163800	Weak transcription	Ovary	ovary
2	chr6:81154400-81165800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:81156400-81166800	Weak transcription	Aorta	Aorta
4	chr6:81156400-81167000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:81156400-81167000	Weak transcription	Pancreas	Pancrea
6	chr6:81158000-81166400	Weak transcription	Liver	Liver
7	chr6:81162000-81164200	Weak transcription	Stomach Mucosa	stomach
8	chr6:81162600-81165600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:81162800-81164200	Enhancers	HUVEC	blood vessel
10	chr6:81162800-81165400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:81162800-81166200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:81162800-81168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:81162800-81168400	Enhancers	HMEC	breast
14	chr6:81163000-81163600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:81163000-81165800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
17	chr6:81163200-81164200	Enhancers	NHEK	skin
18	chr6:81163200-81164600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:81163200-81166800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:81163200-81168200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:81163200-81169800	Weak transcription	Fetal Heart	heart
22	chr6:81163400-81164600	Enhancers	HSMMtube	muscle
23	chr6:81163400-81165000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:81163400-81165000	Enhancers	HSMM	muscle
25	chr6:81163400-81165200	Enhancers	NH-A	brain
26	chr6:81163400-81165200	Enhancers	Osteobl	bone
27	chr6:81163400-81165400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:81163400-81165400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:81163400-81165400	Enhancers	NHDF-Ad	bronchial
30	chr6:81163400-81165800	Enhancers	NHLF	lung
31	chr6:81163400-81166800	Weak transcription	Brain Angular Gyrus	brain
32	chr6:81163400-81167200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:81163400-81168400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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