Variant report

Variant	rs13707
Chromosome Location	chr14:105935824-105935825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:105934519-105936718	ECC-1	luminal epithelium:	n/a	n/a
2	ZBTB7A	chr14:105934582-105936644	ECC-1	luminal epithelium:	n/a	n/a
3	MAX	chr14:105933160-105936483	MCF-7	breast:	n/a	n/a
4	NFIC	chr14:105934611-105937722	ECC-1	luminal epithelium:	n/a	n/a
5	TCF12	chr14:105934643-105937725	ECC-1	luminal epithelium:	n/a	n/a
6	FOXM1	chr14:105935780-105936544	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr14:105935714-105935976	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr14:105934929-105936452	K562	blood:	n/a	n/a
9	YY1	chr14:105934894-105936567	ECC-1	luminal epithelium:	n/a	n/a
10	EP300	chr14:105934777-105936536	ECC-1	luminal epithelium:	n/a	n/a
11	MAX	chr14:105934463-105936615	ECC-1	luminal epithelium:	n/a	n/a
12	TEAD4	chr14:105935815-105936937	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr14:105935499-105936526	HL-60	blood:	n/a	n/a
14	ZBTB7A	chr14:105934403-105936886	ECC-1	luminal epithelium:	n/a	n/a
15	TCF12	chr14:105934559-105936808	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr14:105934870-105936385	Hela-S3	cervix:	n/a	n/a
17	EP300	chr14:105934658-105937723	ECC-1	luminal epithelium:	n/a	chr14:105934765-105934781 chr14:105937371-105937387
18	POLR2A	chr14:105935487-105936544	SK-N-MC	brain:	n/a	n/a
19	NR2F2	chr14:105933316-105936483	MCF-7	breast:	n/a	n/a
20	POLR2A	chr14:105935765-105936552	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr14:105935628-105935865	HepG2	liver:	n/a	n/a
22	FOXM1	chr14:105935743-105936621	ECC-1	luminal epithelium:	n/a	n/a
23	TEAD4	chr14:105935705-105937582	ECC-1	luminal epithelium:	n/a	n/a
24	NFIC	chr14:105934625-105936594	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr14:105935764-105935898	H1-hESC	embryonic stem cell:	n/a	n/a
26	GABPA	chr14:105935814-105936561	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105932887..105936381-chr14:105936498..105941811,9	K562	blood:
2	chr14:105863668..105866126-chr14:105933833..105938378,4	MCF-7	breast:
3	chr14:105932887..105936301-chr14:105938712..105941811,4	K562	blood:
4	chr14:105902565..105906697-chr14:105932169..105936497,4	MCF-7	breast:
5	chr14:105930163..105933758-chr14:105934789..105938563,5	K562	blood:

No data

Variant related genes	Relation type
CRIP2	TF binding region
ENSG00000226174	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000257270	Chromatin interaction
ENSG00000182809	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10138891	0.93[AMR][1000 genomes]
rs11160845	0.93[AMR][1000 genomes]
rs12323571	0.93[AMR][1000 genomes]
rs12891645	0.81[AMR][1000 genomes]
rs3936032	0.87[AMR][1000 genomes]
rs4074000	0.81[AMR][1000 genomes]
rs4074001	0.81[AMR][1000 genomes]
rs4983412	0.86[AMR][1000 genomes]
rs4983414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983418	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4983419	0.86[AMR][1000 genomes]
rs4983422	0.93[AMR][1000 genomes]
rs4983423	0.93[AMR][1000 genomes]
rs6576105	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6576106	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7140395	0.93[AMR][1000 genomes]
rs7158977	0.93[AMR][1000 genomes]
rs73362069	0.93[AMR][1000 genomes]
rs7492892	0.86[AMR][1000 genomes]
rs7492915	0.87[AMR][1000 genomes]
rs7493450	0.86[AMR][1000 genomes]
rs8012089	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:105897800-105940000	Weak transcription	K562	blood
4	chr14:105898400-105939800	Weak transcription	NHDF-Ad	bronchial
5	chr14:105902800-105937800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:105904400-105939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:105907000-105940600	Weak transcription	Small Intestine	intestine
8	chr14:105912000-105937000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:105915400-105936800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr14:105915600-105937000	Strong transcription	Fetal Stomach	stomach
11	chr14:105926200-105937000	Strong transcription	Brain Germinal Matrix	brain
12	chr14:105926200-105937400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:105926400-105936600	Strong transcription	Duodenum Mucosa	Duodenum
14	chr14:105926400-105936600	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:105926400-105937000	Strong transcription	Fetal Intestine Small	intestine
16	chr14:105926400-105937800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:105926400-105937800	Strong transcription	Fetal Brain Female	brain
18	chr14:105926400-105937800	Strong transcription	Thymus	Thymus
19	chr14:105926600-105936000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:105926600-105936400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:105926600-105936400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr14:105926600-105936400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:105926600-105936600	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr14:105926600-105936600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:105926600-105937200	Strong transcription	Fetal Intestine Large	intestine
26	chr14:105926600-105937200	Strong transcription	Ovary	ovary
27	chr14:105926600-105937400	Strong transcription	Dnd41	blood
28	chr14:105926800-105936400	Strong transcription	Primary T cells from cord blood	blood
29	chr14:105927200-105939800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:105929000-105938600	Enhancers	Fetal Heart	heart
31	chr14:105929200-105940000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:105929400-105936800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr14:105929600-105936400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:105930400-105938800	Genic enhancers	Fetal Muscle Leg	muscle
35	chr14:105930800-105937600	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr14:105931000-105938600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:105931000-105939800	Weak transcription	Primary B cells from cord blood	blood
38	chr14:105931200-105936400	Strong transcription	HUVEC	blood vessel
39	chr14:105931200-105939800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:105931400-105937200	Weak transcription	Brain Angular Gyrus	brain
41	chr14:105931600-105939200	Weak transcription	Brain Substantia Nigra	brain
42	chr14:105932000-105938200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr14:105932000-105938800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr14:105932000-105939200	Weak transcription	HepG2	liver
45	chr14:105932200-105936400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:105932200-105940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr14:105932400-105938000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:105932400-105938600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:105932400-105939400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:105932400-105940200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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