Variant report

Variant	rs137498
Chromosome Location	chr22:33276313-33276314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33275938..33278080-chr22:33280895..33283450,2	K562	blood:
2	22:32920308-32927723..22:33273392-33279610	K562	blood:
3	22:32292186-32294405..22:33273392-33279610	K562	blood:
4	chr22:33265719..33267942-chr22:33275448..33277147,2	K562	blood:

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13054818	0.84[CHB][hapmap]
rs137500	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs137503	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs137506	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs137515	0.81[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs137520	0.85[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs137528	0.84[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs137538	0.85[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs137548	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
2	chr22:33257800-33282000	Weak transcription	HepG2	liver
3	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:33271600-33276600	Weak transcription	Thymus	Thymus
7	chr22:33272000-33276400	Weak transcription	Spleen	Spleen
8	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
9	chr22:33274400-33277600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr22:33275000-33280200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr22:33275400-33276400	Enhancers	K562	blood
12	chr22:33275400-33277200	Enhancers	Fetal Thymus	thymus
13	chr22:33275400-33279600	Enhancers	Primary hematopoietic stem cells	blood
14	chr22:33275400-33279600	Enhancers	Fetal Muscle Leg	muscle
15	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr22:33275600-33277600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr22:33275800-33277000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr22:33275800-33284000	Enhancers	Fetal Stomach	stomach
19	chr22:33276000-33276800	Enhancers	HSMM	muscle
20	chr22:33276000-33277600	Enhancers	Stomach Smooth Muscle	stomach
21	chr22:33276000-33277800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr22:33276000-33277800	Enhancers	Fetal Intestine Large	intestine
23	chr22:33276000-33277800	Enhancers	Fetal Intestine Small	intestine
24	chr22:33276000-33279600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr22:33276200-33277600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr22:33276200-33277600	Enhancers	Left Ventricle	heart
27	chr22:33276200-33277600	Enhancers	Lung	lung
28	chr22:33276200-33277600	Enhancers	Right Atrium	heart
29	chr22:33276200-33277600	Enhancers	HSMMtube	muscle
30	chr22:33276200-33278200	Enhancers	Right Ventricle	heart
31	chr22:33276200-33278400	Enhancers	Placenta	Placenta
32	chr22:33276200-33279000	Enhancers	Fetal Muscle Trunk	muscle
33	chr22:33276200-33279400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links