Variant report

Variant	rs137548
Chromosome Location	chr22:33313367-33313368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13054818	0.89[CHB][hapmap]
rs137498	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs137500	0.85[CEU][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs137503	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs137506	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs137515	0.94[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs137520	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs137528	0.94[ASW][hapmap];0.88[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs137538	0.89[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4448	0.83[ASN][1000 genomes]
rs4450	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4451	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs715555	0.90[LWK][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33308200-33313600	Weak transcription	Fetal Brain Male	brain
2	chr22:33311800-33313400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr22:33312200-33313600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr22:33312200-33313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33312400-33313400	Weak transcription	Brain Anterior Caudate	brain
6	chr22:33312400-33314200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:33312800-33313600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:33312800-33318400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr22:33313000-33313400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr22:33313000-33313600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr22:33313000-33314400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr22:33313200-33313400	Bivalent Enhancer	Brain Substantia Nigra	brain
13	chr22:33313200-33314200	Enhancers	Brain Cingulate Gyrus	brain
14	chr22:33313200-33314400	Enhancers	Fetal Heart	heart
15	chr22:33313200-33318400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links