Variant report

Variant	rs1375975
Chromosome Location	chr11:26862323-26862324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10835076	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029718	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029720	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029722	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12799405	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1375973	0.88[ASN][1000 genomes]
rs1809072	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2014690	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2060650	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4922774	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4923390	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61887220	0.82[AMR][1000 genomes]
rs7122599	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7935718	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897142	chr11:26786121-26903063	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv467780	chr11:26792264-26876833	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv553909	chr11:26792264-26876833	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897143	chr11:26793052-26880991	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv897144	chr11:26793052-26903063	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553910	chr11:26794368-26863615	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv897145	chr11:26794368-26876833	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv553911	chr11:26850692-26905496	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26858600-26862600	Weak transcription	HSMM	muscle
2	chr11:26861000-26863200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:26861200-26864200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:26861600-26862400	Enhancers	Psoas Muscle	Psoas
5	chr11:26861600-26862400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:26861600-26862800	Enhancers	Aorta	Aorta
7	chr11:26861600-26863200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:26861600-26863800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:26861600-26865000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:26861600-26865000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:26861800-26862400	Weak transcription	NHDF-Ad	bronchial
12	chr11:26861800-26863800	Weak transcription	NHLF	lung
13	chr11:26861800-26864200	Enhancers	Fetal Stomach	stomach
14	chr11:26861800-26870600	Weak transcription	Fetal Kidney	kidney
15	chr11:26862000-26863600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:26862000-26863800	Weak transcription	Adipose Nuclei	Adipose
17	chr11:26862000-26865000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:26862000-26865000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:26862000-26865400	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:26862200-26863200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:26862200-26863600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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