Variant report

Variant	rs1375999
Chromosome Location	chr11:10453239-10453240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11042805	1.00[ASN][1000 genomes]
rs11821297	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103258	0.95[ASN][1000 genomes]
rs72856136	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72856138	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72856140	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72856142	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72856143	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72856146	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72856176	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10448600-10460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10449400-10456000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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