Variant report

Variant	rs72856138
Chromosome Location	chr11:10433966-10433967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10432214..10434068-chr11:10476059..10477967,2	K562	blood:
2	chr11:10433682..10435838-chr11:10460593..10462614,2	K562	blood:
3	chr11:10433858..10436750-chr11:10437236..10438791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10770116	0.80[AFR][1000 genomes]
rs10840407	0.80[AFR][1000 genomes]
rs10840408	0.80[AFR][1000 genomes]
rs11042805	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11821297	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375999	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103258	0.95[ASN][1000 genomes]
rs72856136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72856176	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	esv19587	chr11:10433896-10434590	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
2	chr11:10427800-10435000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10427800-10435200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:10427800-10436000	Weak transcription	HSMMtube	muscle
5	chr11:10428200-10435200	Weak transcription	Dnd41	blood
6	chr11:10429000-10434000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:10429000-10436000	Enhancers	Placenta	Placenta
8	chr11:10429800-10435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10429800-10435400	Weak transcription	Left Ventricle	heart
10	chr11:10429800-10436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:10430000-10435200	Weak transcription	NHDF-Ad	bronchial
12	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
13	chr11:10431200-10434800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:10431200-10435400	Weak transcription	HUVEC	blood vessel
15	chr11:10431200-10435600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:10431200-10435600	Weak transcription	Spleen	Spleen
17	chr11:10431200-10436000	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:10431200-10436200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:10431400-10435000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:10431400-10435000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:10431400-10435200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:10431400-10435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:10431400-10435400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:10431400-10435800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:10431600-10434600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:10431600-10434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:10431600-10434800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:10431600-10435000	Weak transcription	Primary B cells from cord blood	blood
29	chr11:10431600-10435000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:10431600-10435000	Weak transcription	Fetal Thymus	thymus
31	chr11:10431600-10435400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:10431800-10434600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:10431800-10435000	Weak transcription	Primary T cells from cord blood	blood
34	chr11:10431800-10435000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:10431800-10435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:10431800-10435200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:10432000-10435400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:10432200-10434200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr11:10432400-10434400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:10432400-10434600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:10432600-10434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:10432800-10434600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:10432800-10434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:10432800-10435000	Weak transcription	K562	blood
45	chr11:10432800-10435400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:10432800-10435400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
48	chr11:10433200-10434000	Weak transcription	Esophagus	oesophagus
49	chr11:10433200-10434200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:10433600-10435400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links