Variant report

Variant	rs1376442
Chromosome Location	chr8:42509597-42509598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10109429	0.82[CHD][hapmap]
rs12156092	0.97[ASN][1000 genomes]
rs13280604	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1451240	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1530847	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1530850	0.96[ASN][1000 genomes]
rs16891561	0.87[CHB][hapmap]
rs1868860	0.96[ASN][1000 genomes]
rs1947295	0.99[ASN][1000 genomes]
rs1955185	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1979140	1.00[CHB][hapmap]
rs34842664	0.96[ASN][1000 genomes]
rs4236926	0.84[CHB][hapmap]
rs4736835	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs4737060	0.98[ASN][1000 genomes]
rs4950	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6474412	0.93[CHB][hapmap]
rs6474413	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6989472	0.96[ASN][1000 genomes]
rs7004381	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs7837296	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42505400-42513800	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:42505400-42515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:42505800-42514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:42505800-42514000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:42506000-42509600	Weak transcription	Fetal Kidney	kidney
6	chr8:42507400-42510000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:42508000-42509600	Enhancers	Fetal Heart	heart
8	chr8:42508200-42511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:42508400-42509600	Weak transcription	Left Ventricle	heart
10	chr8:42508400-42509600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:42508600-42512800	Weak transcription	HepG2	liver
12	chr8:42509200-42510400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:42509200-42515000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links