Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10109429	0.82[CHD][hapmap]
rs12156092	0.99[ASN][1000 genomes]
rs13280604	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1376442	0.96[ASN][1000 genomes]
rs1451240	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1530847	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs16891561	0.87[CHB][hapmap]
rs1868860	1.00[ASN][1000 genomes]
rs1947295	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1955185	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1979140	1.00[CHB][hapmap]
rs34842664	0.94[ASN][1000 genomes]
rs4236926	0.84[CHB][hapmap]
rs4736835	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs4737060	0.96[ASN][1000 genomes]
rs4950	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6474412	0.93[CHB][hapmap]
rs6474413	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6989472	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004381	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs7837296	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42498200-42507800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:42500600-42505000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:42501000-42505200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:42504200-42506400	Weak transcription	Small Intestine	intestine
5	chr8:42504400-42505400	Enhancers	NHDF-Ad	bronchial
6	chr8:42504400-42506000	Enhancers	Fetal Kidney	kidney
7	chr8:42504600-42505000	Bivalent Enhancer	NHLF	lung
8	chr8:42504800-42505400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:42504800-42505400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:42504800-42505800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr8:42504800-42506000	Enhancers	Psoas Muscle	Psoas
12	chr8:42504800-42507000	Enhancers	Fetal Heart	heart

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