Variant report

Variant	rs1376609
Chromosome Location	chr7:137085980-137085981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137083432..137086425-chr7:137089832..137091698,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11972876	0.80[ASN][1000 genomes]
rs1451526	0.93[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs1647176	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1669020	0.84[ASN][1000 genomes]
rs1669026	0.82[ASN][1000 genomes]
rs2278101	0.80[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs2351136	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137070200-137087000	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137073600-137086600	Weak transcription	Fetal Brain Female	brain
3	chr7:137073800-137095600	Weak transcription	HSMMtube	muscle
4	chr7:137075000-137087000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:137076000-137087000	Weak transcription	Fetal Stomach	stomach
6	chr7:137077800-137086400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:137080600-137086400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:137080600-137106000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:137081000-137086600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:137081000-137086600	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:137081200-137086600	Weak transcription	Brain Substantia Nigra	brain
12	chr7:137081200-137087200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:137081200-137090000	Weak transcription	Aorta	Aorta
14	chr7:137082200-137089600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:137083400-137087000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:137083600-137087200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:137084000-137086000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:137084200-137087200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:137084200-137087400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:137084400-137086000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:137084800-137087400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:137084800-137090200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:137085000-137086000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:137085000-137086400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:137085200-137102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:137085400-137086600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:137085400-137087200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:137085400-137087400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:137085400-137087400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:137085400-137089200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:137085400-137090000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr7:137085400-137091600	Weak transcription	HSMM	muscle
33	chr7:137085600-137089600	Weak transcription	Osteobl	bone
34	chr7:137085800-137086200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:137085800-137086600	Weak transcription	Fetal Heart	heart
36	chr7:137085800-137087400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:137085800-137089200	Weak transcription	NHDF-Ad	bronchial
38	chr7:137085800-137089600	Weak transcription	NH-A	brain

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