Variant report

Variant	rs2278101
Chromosome Location	chr7:137080712-137080713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11972876	0.85[ASN][1000 genomes]
rs1376609	0.80[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs1451526	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1647176	0.95[ASN][1000 genomes]
rs1669020	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1669026	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2351136	0.95[ASN][1000 genomes]
rs7792568	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv889242	chr7:137005808-137081223	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv981853	chr7:137057411-137080952	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137066200-137084800	Weak transcription	HSMM	muscle
2	chr7:137070200-137087000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:137071000-137083400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:137073600-137086600	Weak transcription	Fetal Brain Female	brain
5	chr7:137073800-137081200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:137073800-137095600	Weak transcription	HSMMtube	muscle
7	chr7:137074000-137084800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:137074400-137084000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:137075000-137087000	Weak transcription	Brain Anterior Caudate	brain
10	chr7:137075200-137084800	Weak transcription	Fetal Heart	heart
11	chr7:137076000-137081000	Weak transcription	Osteobl	bone
12	chr7:137076000-137087000	Weak transcription	Fetal Stomach	stomach
13	chr7:137076400-137081200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:137077400-137081000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:137077800-137086400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:137078600-137082000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:137079200-137082000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:137080000-137081200	Strong transcription	Aorta	Aorta
19	chr7:137080200-137081000	Enhancers	Brain Cingulate Gyrus	brain
20	chr7:137080200-137081000	Enhancers	Brain Hippocampus Middle	brain
21	chr7:137080200-137081400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:137080400-137081200	Enhancers	Brain Germinal Matrix	brain
23	chr7:137080400-137081200	Enhancers	Brain Substantia Nigra	brain
24	chr7:137080400-137081200	Enhancers	Fetal Brain Male	brain
25	chr7:137080400-137081200	Enhancers	Fetal Muscle Trunk	muscle
26	chr7:137080600-137082000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:137080600-137086400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:137080600-137106000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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