Variant report

Variant	rs1376772
Chromosome Location	chr8:65499573-65499574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10112058	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10441560	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10441561	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1451868	0.96[ASN][1000 genomes]
rs4737675	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7009901	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs73689545	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7831241	0.86[ASN][1000 genomes]
rs7841976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643388	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65497800-65499600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
2	chr8:65498200-65499800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
3	chr8:65498200-65499800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr8:65498200-65500000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr8:65498400-65499600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr8:65498400-65499600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
7	chr8:65498400-65500000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr8:65498400-65500200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr8:65498400-65500200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr8:65498600-65500000	Bivalent Enhancer	Liver	Liver
11	chr8:65498600-65500200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr8:65498800-65499600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:65498800-65499600	Weak transcription	Pancreas	Pancrea
14	chr8:65498800-65500000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr8:65499000-65499600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:65499200-65499600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
17	chr8:65499200-65499600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr8:65499200-65499600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:65499200-65499800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:65499200-65500000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr8:65499200-65500000	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr8:65499200-65500000	Bivalent Enhancer	Fetal Brain Male	brain
23	chr8:65499200-65500200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:65499400-65499600	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr8:65499400-65499800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:65499400-65500000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:65499400-65500200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr8:65499400-65500200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell

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