Variant report
| Variant | rs1377248 |
|---|---|
| Chromosome Location | chr8:78069874-78069875 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:77912447..77915993-chr8:78068224..78071047,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164751 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11778781 | 0.84[ASN][1000 genomes] |
| rs12677707 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12680110 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13265822 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13265936 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs13267803 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13268651 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13269590 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1377246 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1452808 | 0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1452832 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28719703 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4147343 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7006189 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7016358 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7016911 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891045 | chr8:77998659-78477561 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
